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I´m working with a dataset of 566 genomes to analyze a pangenome. So I was working with PANWEB to create this pan core genome curve, however, there is too much sequence to work with this webserver. Well, specifically I´m looking for this kind of plot: enter image description here

So, I just want to ask for some ideas of programs to do that with a big dataset and with a command line.

Here is the reference: https://www.researchgate.net/figure/Pan-genome-and-core-genome-Graph-representing-the-pan-genome-blue-and-core-genome_fig1_317390138

Mauri1313
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1 Answers1

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The command create_pan_genome_plots from Roary can create a plot like this: enter image description here

Forrest Vigor
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